Setup and Running Guide

Whether analysis is performed on the Seven Bridges Genomics platform or on a local server, sequencing analysis uses the same BD Rhapsody™ Sequence Analysis Pipeline. The necessary input files and optional parameters are common to both run modes. During the execution of the pipeline, sequencing analysis processes sequence read files to generate molecular counts per bioproduct per cell, metrics, and possibly other files applicable to the assay types performed in the experiment.

This section includes detailed instructions on how to set up and run the BD Rhapsody™ Sequence Analysis Pipeline.