BD Rhapsody™ Sequence Analysis Pipeline 2.2.1

Immune cell classification result

File: [sample_name]_(assay)_cell_type_experimental.csv

When immune cell classification is done

• using WTA/Abseq data: [sample_name]_cell_type_experimental.csv
• using ATAC data: [sample_name]_ATAC_cell_type_experimental.csv
• using WTA/Abseq and ATAC data: [sample_name]_Joint_cell_type_experimental.csv

Immune cell classification result has two colums: cell index and predicted cell type. Here is the list of predicted cell types: classical monocyte, nonclassical monocyte, dendritic cell, B cell, naive CD4 T cell, memory CD4 T cell, naive CD8 T cell, memory CD8 T cell, natural killer cell, and gamma-delta T cell.